Last updated: 2023-12-15
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Knit directory: 1_heteroAstrocytes/
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analysis/astrotrap_direct.ipynb, and
generalized implementation, which use ad hoc adjustment for provided
dataset for anatomic region labels prediction -
analysis/astrotrap_adhoc.ipynb), which might require from
several days (in our case: 256 CPU cores, 2 TB RAM, and NVIDIA RTX A6000
GPU) and up to several weeks depending on available CPU and GPU
resources.Snakefiles;snakemake -f --use-singularity -prk --cores <FILL-IN-N-CORES> --resources nvidia_gpu=1 --singularity-args "--nv --bind <FILL-IN-PATH-TO-CLONED-REPO>" --rerun-incomplete --retries 1 --resources mem_mb=<FILL-IN-MEM>